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1D07

Hydrolytic haloalkane dehalogenase linb from sphingomonas paucimobilis UT26 with 1,3-propanediol, a product of debromidation of dibrompropane, at 2.0A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0009636biological_processresponse to toxic substance
A0016787molecular_functionhydrolase activity
A0018786molecular_functionhaloalkane dehalogenase activity
A0042597cellular_componentperiplasmic space
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BR A 901
ChainResidue
AASN38
ATRP109
APHE169
APRO208
APDO903

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BR A 902
ChainResidue
AHOH1007
AHOH1028
AGLN165
AASP166
APRO175
AILE178

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PDO A 903
ChainResidue
AASN38
AASP108
APHE151
APHE169
AVAL173
AHIS272
APHE273
ABR901

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Nucleophile => ECO:0000305|PubMed:10100638, ECO:0000305|PubMed:12939138, ECO:0000305|PubMed:14744129
ChainResidueDetails
AASP108

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton donor => ECO:0000305|PubMed:10100638, ECO:0000305|PubMed:12939138, ECO:0000305|PubMed:14744129
ChainResidueDetails
AGLU132

site_idSWS_FT_FI3
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000305|PubMed:10100638, ECO:0000305|PubMed:12939138, ECO:0000305|PubMed:14744129
ChainResidueDetails
AHIS272

site_idSWS_FT_FI4
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:14744129
ChainResidueDetails
AASN38

site_idSWS_FT_FI5
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:14744129, ECO:0000269|PubMed:17259360, ECO:0007744|PDB:1MJ5, ECO:0007744|PDB:2BFN
ChainResidueDetails
ATRP109

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1cv2
ChainResidueDetails
AHIS272
ATRP109
AGLU132
AASP108

site_idMCSA1
Number of Residues5
DetailsM-CSA 467
ChainResidueDetails
AASN38electrostatic stabiliser
AASP108covalent catalysis
ATRP109electrostatic stabiliser
AGLU132activator, electrostatic stabiliser
AHIS272activator, electrostatic stabiliser, proton shuttle (general acid/base)

237735

PDB entries from 2025-06-18

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