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1CVL

CRYSTAL STRUCTURE OF BACTERIAL LIPASE FROM CHROMOBACTERIUM VISCOSUM ATCC 6918

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004806molecular_functiontriacylglycerol lipase activity
A0005576cellular_componentextracellular region
A0006629biological_processlipid metabolic process
A0016042biological_processlipid catabolic process
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 320
ChainResidue
AASP241
AASP287
AGLN291
ALEU292
AVAL295
AHOH406
AHOH555

site_idACT
Number of Residues3
DetailsTHE CATALYTIC TRIAD OF THE ACTIVE CENTER CONSISTS OF THE RESIDUES SER 87 - HIS 285 - ASP 263, ALTHOUGH THEY ARE NOT EXPOSED TO THE SOLVENT, BUT A NARROW CHANNEL CONNECTS THEM WITH THE SURFACE.
ChainResidue
ASER87
AHIS285
AASP263

site_idCA
Number of Residues6
DetailsCA BINDING SITE.
ChainResidue
AASP241
AASP287
AGLN291
AVAL295
AHOH460
AHOH555

site_idOXY
Number of Residues2
DetailsPERFORMED OXYANION, STABILIZED BY THE AMIDE NITROGEN ATOMS OF LEU 17 AND GLN 88, ALREADY PRESENT IN CLOSED CONFORMATION OF THE LIPASE.
ChainResidue
ALEU17
AGLN88

Functional Information from PROSITE/UniProt
site_idPS00120
Number of Residues10
DetailsLIPASE_SER Lipases, serine active site. VNLIGHSQGG
ChainResidueDetails
AVAL81-GLY90

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"8683577","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"Charge relay system","evidences":[{"source":"PubMed","id":"8683577","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P22088","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"8683577","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1CVL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1QGE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1tah
ChainResidueDetails
AHIS285
ASER87
AASP263

site_idCSA2
Number of Residues5
DetailsAnnotated By Reference To The Literature 1tah
ChainResidueDetails
ALEU17
AHIS285
AGLN88
ASER87
AASP263

site_idMCSA1
Number of Residues5
DetailsM-CSA 519
ChainResidueDetails
AASP56electrostatic stabiliser
AVAL126covalently attached, nucleofuge, nucleophile, proton acceptor, proton donor
ALEU127electrostatic stabiliser
ASER280metal ligand
AASP302electrostatic stabiliser, increase basicity, modifies pKa

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PDB entries from 2025-12-24

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