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1BS8

PEPTIDE DEFORMYLASE AS ZN2+ CONTAINING FORM IN COMPLEX WITH TRIPEPTIDE MET-ALA-SER

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005829cellular_componentcytosol
A0006412biological_processtranslation
A0008198molecular_functionferrous iron binding
A0008270molecular_functionzinc ion binding
A0016787molecular_functionhydrolase activity
A0031365biological_processN-terminal protein amino acid modification
A0042586molecular_functionpeptide deformylase activity
A0043022molecular_functionribosome binding
A0046872molecular_functionmetal ion binding
B0005515molecular_functionprotein binding
B0005829cellular_componentcytosol
B0006412biological_processtranslation
B0008198molecular_functionferrous iron binding
B0008270molecular_functionzinc ion binding
B0016787molecular_functionhydrolase activity
B0031365biological_processN-terminal protein amino acid modification
B0042586molecular_functionpeptide deformylase activity
B0043022molecular_functionribosome binding
B0046872molecular_functionmetal ion binding
C0005515molecular_functionprotein binding
C0005829cellular_componentcytosol
C0006412biological_processtranslation
C0008198molecular_functionferrous iron binding
C0008270molecular_functionzinc ion binding
C0016787molecular_functionhydrolase activity
C0031365biological_processN-terminal protein amino acid modification
C0042586molecular_functionpeptide deformylase activity
C0043022molecular_functionribosome binding
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 3001
ChainResidue
BHIS554
BGLN555
CARG1029

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 3002
ChainResidue
BHOH111
BARG529
CHIS1054
CGLN1055

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 2001
ChainResidue
AGLN50
ACYS90
AHIS132
AHIS136
AHOH2040
AHOH2041

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 2001
ChainResidue
BGLN550
BCYS590
BHIS632
BHIS636
BHOH3005

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN C 2001
ChainResidue
CGLN1050
CCYS1090
CHIS1132
CHIS1136
CHOH3006
CHOH3007

site_idZNA
Number of Residues3
DetailsONE TRIPEPTIDE MET-ALA-SER IS LOCATED IN ACTIVE SITE NEAR ZINC ION FOR CHAIN A
ChainResidue
ACYS90
AHIS132
AHIS136

site_idZNB
Number of Residues3
DetailsONE TRIPEPTIDE MET-ALA-SER IS LOCATED IN ACTIVE SITE NEAR ZINC ION FOR CHAIN B
ChainResidue
BCYS590
BHIS632
BHIS636

site_idZNC
Number of Residues3
DetailsONE TRIPEPTIDE MET-ALA-SER IS LOCATED IN ACTIVE SITE NEAR ZINC ION FOR CHAIN C
ChainResidue
CCYS1090
CHIS1132
CHIS1136

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsActive site: {"evidences":[{"source":"PubMed","id":"9846875","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues9
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"9846875","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs4
ChainResidueDetails
AGLU133
AGLY45
ALEU91
AGLN50

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs4
ChainResidueDetails
BLEU591
BGLN550
BGLU633
BGLY545

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs4
ChainResidueDetails
CGLN1050
CGLY1045
CLEU1091
CGLU1133

site_idMCSA1
Number of Residues7
DetailsM-CSA 98
ChainResidueDetails
AGLY45activator, hydrogen bond acceptor
AGLN50electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor
ACYS90metal ligand
ALEU91electrostatic stabiliser, hydrogen bond donor
AHIS132metal ligand
AGLU133hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AHIS136metal ligand

site_idMCSA2
Number of Residues7
DetailsM-CSA 98
ChainResidueDetails
BGLY545activator, hydrogen bond acceptor
BGLN550electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor
BCYS590metal ligand
BLEU591electrostatic stabiliser, hydrogen bond donor
BHIS632metal ligand
BGLU633hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BHIS636metal ligand

site_idMCSA3
Number of Residues7
DetailsM-CSA 98
ChainResidueDetails
CGLY1045activator, hydrogen bond acceptor
CGLN1050electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor
CCYS1090metal ligand
CLEU1091electrostatic stabiliser, hydrogen bond donor
CHIS1132metal ligand
CGLU1133hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
CHIS1136metal ligand

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PDB entries from 2025-12-03

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