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1B4E

X-ray structure of 5-aminolevulinic acid dehydratase complexed with the inhibitor levulinic acid

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003824molecular_functioncatalytic activity
A0004655molecular_functionporphobilinogen synthase activity
A0005829cellular_componentcytosol
A0006779biological_processporphyrin-containing compound biosynthetic process
A0006782biological_processprotoporphyrinogen IX biosynthetic process
A0006783biological_processheme biosynthetic process
A0008270molecular_functionzinc ion binding
A0016829molecular_functionlyase activity
A0033014biological_processtetrapyrrole biosynthetic process
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 401
ChainResidue
APRO15
AARG18
ALYS217
AHOH536
AHOH538
AHOH776

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 402
ChainResidue
AHOH564
AHOH728
AHOH791
AARG226
AARG227
AARG257

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 403
ChainResidue
ASER14
ALYS107
APRO111
AHOH524
AHOH861

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 404
ChainResidue
AGLU40
AGLU40
AHIS84
AHIS84

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 405
ChainResidue
ACYS120
ACYS122
ACYS130
AHOH869

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 406
ChainResidue
AGLU232
AHOH697
AHOH698
AHOH699
AHOH870
AHOH871

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SHF A 407
ChainResidue
APHE79
ALYS195
ATYR201
APHE204
ALYS247
ATYR270
AVAL272
ASER273
ATYR312

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 408
ChainResidue
AGLU275
ASER297
AHOH746
AHOH864

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 409
ChainResidue
AGLU22
ALEU295
AGLU296
AHOH558
AHOH717

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 410
ChainResidue
AALA156
AALA182
APHE184
AHOH656

Functional Information from PROSITE/UniProt
site_idPS00169
Number of Residues13
DetailsD_ALA_DEHYDRATASE Delta-aminolevulinic acid dehydratase active site. GaDcLMVKPAgaY
ChainResidueDetails
AGLY240-TYR252

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Schiff-base intermediate with substrate
ChainResidueDetails
APHE196
APRO248

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:11444968, ECO:0000269|PubMed:11909869
ChainResidueDetails
APHE121
AGLU123
AGLY131
ASER233

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AGLU206
ALYS217
AGLY274
APHE313

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1h7o
ChainResidueDetails
AASP118
ALYS195
ALYS247
ASER165

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PDB entries from 2025-06-18

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