Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1B33

STRUCTURE OF LIGHT HARVESTING COMPLEX OF ALLOPHYCOCYANIN ALPHA AND BETA CHAINS/CORE-LINKER COMPLEX AP*LC7.8

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0015979	biological_process	photosynthesis
A	0030076	cellular_component	light-harvesting complex
A	0030089	cellular_component	phycobilisome
A	0031676	cellular_component	plasma membrane-derived thylakoid membrane
B	0015979	biological_process	photosynthesis
B	0030076	cellular_component	light-harvesting complex
B	0030089	cellular_component	phycobilisome
B	0031676	cellular_component	plasma membrane-derived thylakoid membrane
C	0015979	biological_process	photosynthesis
C	0030076	cellular_component	light-harvesting complex
C	0030089	cellular_component	phycobilisome
C	0031676	cellular_component	plasma membrane-derived thylakoid membrane
D	0015979	biological_process	photosynthesis
D	0030076	cellular_component	light-harvesting complex
D	0030089	cellular_component	phycobilisome
D	0031676	cellular_component	plasma membrane-derived thylakoid membrane
E	0015979	biological_process	photosynthesis
E	0030076	cellular_component	light-harvesting complex
E	0030089	cellular_component	phycobilisome
E	0031676	cellular_component	plasma membrane-derived thylakoid membrane
F	0015979	biological_process	photosynthesis
F	0030076	cellular_component	light-harvesting complex
F	0030089	cellular_component	phycobilisome
F	0031676	cellular_component	plasma membrane-derived thylakoid membrane
H	0015979	biological_process	photosynthesis
H	0030076	cellular_component	light-harvesting complex
H	0030089	cellular_component	phycobilisome
H	0031676	cellular_component	plasma membrane-derived thylakoid membrane
I	0015979	biological_process	photosynthesis
I	0030076	cellular_component	light-harvesting complex
I	0030089	cellular_component	phycobilisome
I	0031676	cellular_component	plasma membrane-derived thylakoid membrane
J	0015979	biological_process	photosynthesis
J	0030076	cellular_component	light-harvesting complex
J	0030089	cellular_component	phycobilisome
J	0031676	cellular_component	plasma membrane-derived thylakoid membrane
K	0015979	biological_process	photosynthesis
K	0030076	cellular_component	light-harvesting complex
K	0030089	cellular_component	phycobilisome
K	0031676	cellular_component	plasma membrane-derived thylakoid membrane
L	0015979	biological_process	photosynthesis
L	0030076	cellular_component	light-harvesting complex
L	0030089	cellular_component	phycobilisome
L	0031676	cellular_component	plasma membrane-derived thylakoid membrane
M	0015979	biological_process	photosynthesis
M	0030076	cellular_component	light-harvesting complex
M	0030089	cellular_component	phycobilisome
M	0031676	cellular_component	plasma membrane-derived thylakoid membrane
N	0015979	biological_process	photosynthesis
N	0030076	cellular_component	light-harvesting complex
N	0030089	cellular_component	phycobilisome
N	0031676	cellular_component	plasma membrane-derived thylakoid membrane
O	0015979	biological_process	photosynthesis
O	0030076	cellular_component	light-harvesting complex
O	0030089	cellular_component	phycobilisome
O	0031676	cellular_component	plasma membrane-derived thylakoid membrane

Functional Information from PDB Data

site_id	AC1
Number of Residues	25
Details	BINDING SITE FOR RESIDUE CYC A 201

Chain	Residue
A	VAL64
A	TYR87
A	ILE106
A	MET114
A	LEU118
A	PRO121
A	ALA124
A	HOH206
A	HOH248
A	HOH249
A	HOH258
A	ASN70
F	LEU61
F	TYR62
F	THR66
F	TYR73
F	THR74
F	TYR78
A	ALA71
A	MET76
A	THR79
A	CYS80
A	ARG82
A	ASP83
A	TYR86

site_id	AC2
Number of Residues	28
Details	BINDING SITE FOR RESIDUE CYC B 202

Chain	Residue
B	LEU60
B	ILE65
B	MEN71
B	ARG76
B	ARG77
B	ALA80
B	CYS81
B	ARG83
B	ASP84
B	LEU85
B	TYR87
B	TYR88
B	TYR91
B	ARG107
B	LEU112
B	TYR116
B	LEU119
B	VAL121
B	PRO122
B	ALA125
B	THR126
B	HOH251
N	SER12
N	ARG20
N	GLU21
N	LEU22
N	THR25
N	HOH127

site_id	AC3
Number of Residues	23
Details	BINDING SITE FOR RESIDUE CYC C 203

Chain	Residue
B	TYR62
B	THR66
B	TYR73
B	THR74
B	HOH203
C	VAL64
C	ASN70
C	ALA71
C	MET76
C	THR79
C	CYS80
C	ARG82
C	ASP83
C	TYR86
C	TYR87
C	MET114
C	TYR115
C	LEU118
C	THR120
C	ALA124
C	HOH2019
C	HOH2021
C	HOH2051

site_id	AC4
Number of Residues	30
Details	BINDING SITE FOR RESIDUE CYC D 204

Chain	Residue
D	HOH344
N	ARG2
N	TYR33
N	PHE37
N	GLN40
N	GLN44
N	HOH86
D	LEU60
D	ILE65
D	MEN71
D	MET72
D	ARG76
D	ARG77
D	ALA80
D	CYS81
D	ARG83
D	ASP84
D	TYR87
D	TYR88
D	TYR91
D	ARG107
D	LEU112
D	TYR116
D	LEU119
D	VAL121
D	PRO122
D	ALA125
D	HOH209
D	HOH226
D	HOH285

site_id	AC5
Number of Residues	26
Details	BINDING SITE FOR RESIDUE CYC E 205

Chain	Residue
D	TYR62
D	THR66
D	TYR73
D	THR74
D	TYR78
E	VAL64
E	ASN70
E	ALA71
E	MET76
E	THR79
E	CYS80
E	ARG82
E	ASP83
E	TYR86
E	TYR87
E	MET114
E	TYR115
E	LEU118
E	PRO121
E	ALA124
E	VAL125
E	HOH2007
E	HOH2025
E	HOH2031
E	HOH2061
E	HOH2102

site_id	AC6
Number of Residues	17
Details	BINDING SITE FOR RESIDUE CYC F 206

Chain	Residue
F	ILE65
F	MEN71
F	MET72
F	ARG76
F	ARG77
F	ALA80
F	CYS81
F	ARG83
F	ASP84
F	TYR88
F	ARG107
F	TYR116
F	LEU119
F	VAL121
F	PRO122
F	ALA125
F	HOH296

site_id	AC7
Number of Residues	26
Details	BINDING SITE FOR RESIDUE CYC H 207

Chain	Residue
H	VAL64
H	ASN70
H	ALA71
H	MET76
H	THR79
H	CYS80
H	ARG82
H	ASP83
H	TYR86
H	TYR87
H	ILE106
H	MET114
H	TYR115
H	LEU118
H	THR120
H	PRO121
H	ALA124
H	HOH214
H	HOH225
H	HOH239
M	LEU61
M	TYR62
M	THR66
M	TYR73
M	THR74
M	HOH219

site_id	AC8
Number of Residues	23
Details	BINDING SITE FOR RESIDUE CYC I 208

Chain	Residue
I	MEN71
I	ARG77
I	ALA80
I	CYS81
I	ARG83
I	ASP84
I	TYR87
I	TYR88
I	TYR91
I	LEU112
I	TYR116
I	LEU119
I	VAL121
I	PRO122
I	HOH222
I	HOH227
I	HOH240
I	HOH308
O	SER12
O	ARG20
O	GLU21
O	LEU22
O	THR25

site_id	AC9
Number of Residues	24
Details	BINDING SITE FOR RESIDUE CYC J 209

Chain	Residue
I	TYR62
I	THR66
I	TYR73
I	THR74
I	HOH218
J	VAL64
J	ASN70
J	ALA71
J	MET76
J	CYS80
J	ARG82
J	ASP83
J	TYR86
J	TYR87
J	ILE106
J	MET114
J	TYR115
J	LEU118
J	THR120
J	ALA124
J	HOH2012
J	HOH2023
J	HOH2025
J	HOH2026

site_id	BC1
Number of Residues	23
Details	BINDING SITE FOR RESIDUE CYC K 210

Chain	Residue
K	LEU60
K	MEN71
K	ARG77
K	ALA80
K	CYS81
K	ARG83
K	ASP84
K	TYR88
K	TYR91
K	ARG107
K	LEU112
K	TYR116
K	LEU119
K	VAL121
K	PRO122
K	HOH236
K	HOH249
O	ARG2
O	TYR33
O	PHE37
O	GLN40
O	GLN41
O	HOH81

site_id	BC2
Number of Residues	28
Details	BINDING SITE FOR RESIDUE CYC L 211

Chain	Residue
K	TYR62
K	THR66
K	TYR73
K	THR74
K	THR75
K	TYR78
L	LEU57
L	VAL64
L	ASN70
L	ALA71
L	MET76
L	THR79
L	CYS80
L	ARG82
L	ASP83
L	TYR86
L	TYR87
L	ILE106
L	MET114
L	LEU118
L	THR120
L	ALA124
L	HOH2006
L	HOH2028
L	HOH2031
L	HOH2034
L	HOH2048
L	HOH2099

site_id	BC3
Number of Residues	23
Details	BINDING SITE FOR RESIDUE CYC M 212

Chain	Residue
M	LEU60
M	ILE65
M	MEN71
M	MET72
M	ARG76
M	ARG77
M	ALA80
M	CYS81
M	ARG83
M	ASP84
M	TYR87
M	TYR88
M	TYR91
M	ARG107
M	LEU112
M	TYR116
M	LEU119
M	VAL121
M	PRO122
M	ALA125
M	HOH268
M	HOH298
M	HOH338

site_id	BC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE BO4 L 2001

Chain	Residue
E	GLY68
L	SER18
L	ARG24
L	HOH2016
L	HOH2035
L	HOH2086

site_id	BC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE BO4 J 2002

Chain	Residue
J	SER18
J	GLY20
J	GLU21
J	ARG24
J	HOH2075
J	HOH2107

site_id	BC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE BO4 C 2003

Chain	Residue
C	SER18
C	GLY20
C	GLU21
C	ARG24
C	HOH2018

site_id	BC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE BO4 E 2004

Chain	Residue
E	SER18
E	GLY20
E	ARG24
E	HOH2077

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	12
Details	Binding site: {"description":"covalent"}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	6
Details	Modified residue: {"description":"N4-methylasparagine","evidences":[{"source":"PubMed","id":"9990029","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	6
Details	Modified residue: {"description":"N4-methylasparagine","evidences":[{"source":"PubMed","id":"3122783","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9990029","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"journal article","publicationDate":"1987","firstPage":"1","lastPage":"2","volume":"221","journal":"FEBS Lett.","title":"Gamma-N-methylasparagine in phycobiliproteins from the cyanobacteria Mastigocladus laminosus and Calothrix.","authors":["Ruembeli R.","Suter F.","Wirth M.","Sidler W.","Zuber H."]}}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	110
Details	Domain: {"description":"CpcD-like","evidences":[{"source":"PROSITE-ProRule","id":"PRU00771","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)