1B33
STRUCTURE OF LIGHT HARVESTING COMPLEX OF ALLOPHYCOCYANIN ALPHA AND BETA CHAINS/CORE-LINKER COMPLEX AP*LC7.8
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0009579 | cellular_component | thylakoid |
| A | 0015979 | biological_process | photosynthesis |
| A | 0016020 | cellular_component | membrane |
| A | 0030089 | cellular_component | phycobilisome |
| A | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| B | 0009579 | cellular_component | thylakoid |
| B | 0015979 | biological_process | photosynthesis |
| B | 0016020 | cellular_component | membrane |
| B | 0030089 | cellular_component | phycobilisome |
| B | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| C | 0009579 | cellular_component | thylakoid |
| C | 0015979 | biological_process | photosynthesis |
| C | 0016020 | cellular_component | membrane |
| C | 0030089 | cellular_component | phycobilisome |
| C | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| D | 0009579 | cellular_component | thylakoid |
| D | 0015979 | biological_process | photosynthesis |
| D | 0016020 | cellular_component | membrane |
| D | 0030089 | cellular_component | phycobilisome |
| D | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| E | 0009579 | cellular_component | thylakoid |
| E | 0015979 | biological_process | photosynthesis |
| E | 0016020 | cellular_component | membrane |
| E | 0030089 | cellular_component | phycobilisome |
| E | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| F | 0009579 | cellular_component | thylakoid |
| F | 0015979 | biological_process | photosynthesis |
| F | 0016020 | cellular_component | membrane |
| F | 0030089 | cellular_component | phycobilisome |
| F | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| H | 0009579 | cellular_component | thylakoid |
| H | 0015979 | biological_process | photosynthesis |
| H | 0016020 | cellular_component | membrane |
| H | 0030089 | cellular_component | phycobilisome |
| H | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| I | 0009579 | cellular_component | thylakoid |
| I | 0015979 | biological_process | photosynthesis |
| I | 0016020 | cellular_component | membrane |
| I | 0030089 | cellular_component | phycobilisome |
| I | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| J | 0009579 | cellular_component | thylakoid |
| J | 0015979 | biological_process | photosynthesis |
| J | 0016020 | cellular_component | membrane |
| J | 0030089 | cellular_component | phycobilisome |
| J | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| K | 0009579 | cellular_component | thylakoid |
| K | 0015979 | biological_process | photosynthesis |
| K | 0016020 | cellular_component | membrane |
| K | 0030089 | cellular_component | phycobilisome |
| K | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| L | 0009579 | cellular_component | thylakoid |
| L | 0015979 | biological_process | photosynthesis |
| L | 0016020 | cellular_component | membrane |
| L | 0030089 | cellular_component | phycobilisome |
| L | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| M | 0009579 | cellular_component | thylakoid |
| M | 0015979 | biological_process | photosynthesis |
| M | 0016020 | cellular_component | membrane |
| M | 0030089 | cellular_component | phycobilisome |
| M | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| N | 0009579 | cellular_component | thylakoid |
| N | 0015979 | biological_process | photosynthesis |
| N | 0016020 | cellular_component | membrane |
| N | 0030089 | cellular_component | phycobilisome |
| N | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
| O | 0009579 | cellular_component | thylakoid |
| O | 0015979 | biological_process | photosynthesis |
| O | 0016020 | cellular_component | membrane |
| O | 0030089 | cellular_component | phycobilisome |
| O | 0031676 | cellular_component | plasma membrane-derived thylakoid membrane |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 25 |
| Details | BINDING SITE FOR RESIDUE BLA A 201 |
| Chain | Residue |
| A | VAL64 |
| A | TYR87 |
| A | ILE106 |
| A | MET114 |
| A | LEU118 |
| A | PRO121 |
| A | ALA124 |
| A | HOH206 |
| A | HOH248 |
| A | HOH249 |
| A | HOH258 |
| A | ASN70 |
| F | LEU61 |
| F | TYR62 |
| F | THR66 |
| F | TYR73 |
| F | THR74 |
| F | TYR78 |
| A | ALA71 |
| A | MET76 |
| A | THR79 |
| A | CYS80 |
| A | ARG82 |
| A | ASP83 |
| A | TYR86 |
| site_id | AC2 |
| Number of Residues | 28 |
| Details | BINDING SITE FOR RESIDUE BLA B 202 |
| Chain | Residue |
| B | LEU60 |
| B | ILE65 |
| B | MEN71 |
| B | ARG76 |
| B | ARG77 |
| B | ALA80 |
| B | CYS81 |
| B | ARG83 |
| B | ASP84 |
| B | LEU85 |
| B | TYR87 |
| B | TYR88 |
| B | TYR91 |
| B | ARG107 |
| B | LEU112 |
| B | TYR116 |
| B | LEU119 |
| B | VAL121 |
| B | PRO122 |
| B | ALA125 |
| B | THR126 |
| B | HOH251 |
| N | SER12 |
| N | ARG20 |
| N | GLU21 |
| N | LEU22 |
| N | THR25 |
| N | HOH127 |
| site_id | AC3 |
| Number of Residues | 23 |
| Details | BINDING SITE FOR RESIDUE CYC C 203 |
| Chain | Residue |
| B | TYR62 |
| B | THR66 |
| B | TYR73 |
| B | THR74 |
| B | HOH203 |
| C | VAL64 |
| C | ASN70 |
| C | ALA71 |
| C | MET76 |
| C | THR79 |
| C | CYS80 |
| C | ARG82 |
| C | ASP83 |
| C | TYR86 |
| C | TYR87 |
| C | MET114 |
| C | TYR115 |
| C | LEU118 |
| C | THR120 |
| C | ALA124 |
| C | HOH2019 |
| C | HOH2021 |
| C | HOH2051 |
| site_id | AC4 |
| Number of Residues | 30 |
| Details | BINDING SITE FOR RESIDUE CYC D 204 |
| Chain | Residue |
| D | HOH344 |
| N | ARG2 |
| N | TYR33 |
| N | PHE37 |
| N | GLN40 |
| N | GLN44 |
| N | HOH86 |
| D | LEU60 |
| D | ILE65 |
| D | MEN71 |
| D | MET72 |
| D | ARG76 |
| D | ARG77 |
| D | ALA80 |
| D | CYS81 |
| D | ARG83 |
| D | ASP84 |
| D | TYR87 |
| D | TYR88 |
| D | TYR91 |
| D | ARG107 |
| D | LEU112 |
| D | TYR116 |
| D | LEU119 |
| D | VAL121 |
| D | PRO122 |
| D | ALA125 |
| D | HOH209 |
| D | HOH226 |
| D | HOH285 |
| site_id | AC5 |
| Number of Residues | 26 |
| Details | BINDING SITE FOR RESIDUE CYC E 205 |
| Chain | Residue |
| D | TYR62 |
| D | THR66 |
| D | TYR73 |
| D | THR74 |
| D | TYR78 |
| E | VAL64 |
| E | ASN70 |
| E | ALA71 |
| E | MET76 |
| E | THR79 |
| E | CYS80 |
| E | ARG82 |
| E | ASP83 |
| E | TYR86 |
| E | TYR87 |
| E | MET114 |
| E | TYR115 |
| E | LEU118 |
| E | PRO121 |
| E | ALA124 |
| E | VAL125 |
| E | HOH2007 |
| E | HOH2025 |
| E | HOH2031 |
| E | HOH2061 |
| E | HOH2102 |
| site_id | AC6 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE CYC F 206 |
| Chain | Residue |
| F | ILE65 |
| F | MEN71 |
| F | MET72 |
| F | ARG76 |
| F | ARG77 |
| F | ALA80 |
| F | CYS81 |
| F | ARG83 |
| F | ASP84 |
| F | TYR88 |
| F | ARG107 |
| F | TYR116 |
| F | LEU119 |
| F | VAL121 |
| F | PRO122 |
| F | ALA125 |
| F | HOH296 |
| site_id | AC7 |
| Number of Residues | 26 |
| Details | BINDING SITE FOR RESIDUE CYC H 207 |
| Chain | Residue |
| H | VAL64 |
| H | ASN70 |
| H | ALA71 |
| H | MET76 |
| H | THR79 |
| H | CYS80 |
| H | ARG82 |
| H | ASP83 |
| H | TYR86 |
| H | TYR87 |
| H | ILE106 |
| H | MET114 |
| H | TYR115 |
| H | LEU118 |
| H | THR120 |
| H | PRO121 |
| H | ALA124 |
| H | HOH214 |
| H | HOH225 |
| H | HOH239 |
| M | LEU61 |
| M | TYR62 |
| M | THR66 |
| M | TYR73 |
| M | THR74 |
| M | HOH219 |
| site_id | AC8 |
| Number of Residues | 23 |
| Details | BINDING SITE FOR RESIDUE CYC I 208 |
| Chain | Residue |
| I | MEN71 |
| I | ARG77 |
| I | ALA80 |
| I | CYS81 |
| I | ARG83 |
| I | ASP84 |
| I | TYR87 |
| I | TYR88 |
| I | TYR91 |
| I | LEU112 |
| I | TYR116 |
| I | LEU119 |
| I | VAL121 |
| I | PRO122 |
| I | HOH222 |
| I | HOH227 |
| I | HOH240 |
| I | HOH308 |
| O | SER12 |
| O | ARG20 |
| O | GLU21 |
| O | LEU22 |
| O | THR25 |
| site_id | AC9 |
| Number of Residues | 24 |
| Details | BINDING SITE FOR RESIDUE CYC J 209 |
| Chain | Residue |
| I | TYR62 |
| I | THR66 |
| I | TYR73 |
| I | THR74 |
| I | HOH218 |
| J | VAL64 |
| J | ASN70 |
| J | ALA71 |
| J | MET76 |
| J | CYS80 |
| J | ARG82 |
| J | ASP83 |
| J | TYR86 |
| J | TYR87 |
| J | ILE106 |
| J | MET114 |
| J | TYR115 |
| J | LEU118 |
| J | THR120 |
| J | ALA124 |
| J | HOH2012 |
| J | HOH2023 |
| J | HOH2025 |
| J | HOH2026 |
| site_id | BC1 |
| Number of Residues | 23 |
| Details | BINDING SITE FOR RESIDUE CYC K 210 |
| Chain | Residue |
| K | LEU60 |
| K | MEN71 |
| K | ARG77 |
| K | ALA80 |
| K | CYS81 |
| K | ARG83 |
| K | ASP84 |
| K | TYR88 |
| K | TYR91 |
| K | ARG107 |
| K | LEU112 |
| K | TYR116 |
| K | LEU119 |
| K | VAL121 |
| K | PRO122 |
| K | HOH236 |
| K | HOH249 |
| O | ARG2 |
| O | TYR33 |
| O | PHE37 |
| O | GLN40 |
| O | GLN41 |
| O | HOH81 |
| site_id | BC2 |
| Number of Residues | 28 |
| Details | BINDING SITE FOR RESIDUE CYC L 211 |
| Chain | Residue |
| K | TYR62 |
| K | THR66 |
| K | TYR73 |
| K | THR74 |
| K | THR75 |
| K | TYR78 |
| L | LEU57 |
| L | VAL64 |
| L | ASN70 |
| L | ALA71 |
| L | MET76 |
| L | THR79 |
| L | CYS80 |
| L | ARG82 |
| L | ASP83 |
| L | TYR86 |
| L | TYR87 |
| L | ILE106 |
| L | MET114 |
| L | LEU118 |
| L | THR120 |
| L | ALA124 |
| L | HOH2006 |
| L | HOH2028 |
| L | HOH2031 |
| L | HOH2034 |
| L | HOH2048 |
| L | HOH2099 |
| site_id | BC3 |
| Number of Residues | 23 |
| Details | BINDING SITE FOR RESIDUE CYC M 212 |
| Chain | Residue |
| M | LEU60 |
| M | ILE65 |
| M | MEN71 |
| M | MET72 |
| M | ARG76 |
| M | ARG77 |
| M | ALA80 |
| M | CYS81 |
| M | ARG83 |
| M | ASP84 |
| M | TYR87 |
| M | TYR88 |
| M | TYR91 |
| M | ARG107 |
| M | LEU112 |
| M | TYR116 |
| M | LEU119 |
| M | VAL121 |
| M | PRO122 |
| M | ALA125 |
| M | HOH268 |
| M | HOH298 |
| M | HOH338 |
| site_id | BC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE BO4 L 2001 |
| Chain | Residue |
| E | GLY68 |
| L | SER18 |
| L | ARG24 |
| L | HOH2016 |
| L | HOH2035 |
| L | HOH2086 |
| site_id | BC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE BO4 J 2002 |
| Chain | Residue |
| J | SER18 |
| J | GLY20 |
| J | GLU21 |
| J | ARG24 |
| J | HOH2075 |
| J | HOH2107 |
| site_id | BC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE BO4 C 2003 |
| Chain | Residue |
| C | SER18 |
| C | GLY20 |
| C | GLU21 |
| C | ARG24 |
| C | HOH2018 |
| site_id | BC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE BO4 E 2004 |
| Chain | Residue |
| E | SER18 |
| E | GLY20 |
| E | ARG24 |
| E | HOH2077 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | BINDING: covalent |
| Chain | Residue | Details |
| B | CYS81 | |
| D | CYS81 | |
| F | CYS81 | |
| I | CYS81 | |
| K | CYS81 | |
| M | CYS81 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | MOD_RES: N4-methylasparagine => ECO:0000269|PubMed:3122783, ECO:0000269|PubMed:9990029, ECO:0000269|Ref.3 |
| Chain | Residue | Details |
| B | MEN71 | |
| D | MEN71 | |
| F | MEN71 | |
| I | MEN71 | |
| K | MEN71 | |
| M | MEN71 |
