Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1ABR

CRYSTAL STRUCTURE OF ABRIN-A

Functional Information from GO Data
ChainGOidnamespacecontents
A0017148biological_processnegative regulation of translation
A0030598molecular_functionrRNA N-glycosylase activity
Functional Information from PDB Data
site_idACT
Number of Residues10
DetailsACTIVE SITE CLEFT OF ABRIN-A A-CHAIN CONTAINS 5 INVARIANT AND 5 CONSERVED RESIDUES. THE FIRST 5 RESIDUES IN THE LIST ARE INVARIANT RESIDUES.
ChainResidue
ATYR74
AASN196
ATYR113
AGLU164
AARG167
ATRP198
AASN72
AARG124
AGLN160
AGLU195

site_idGL1
Number of Residues2
DetailsTHE FIRST GLYCOSYLATION SITE OF ABRIN-A B-CHAIN BINDS N-ACETYLGLYCOSAMINE, NDG1, OF FIRST SUGAR CHAIN PRESENTED WITH INSERTION CODE C.
ChainResidue
BASN100
BTYR130

site_idGL2
Number of Residues1
DetailsTHE SECOND GLYCOSYLATION SITE OF ABRIN-A B-CHAIN BINDS N-ACETYLGLYCOSAMINES, NDG1 AND NDG2, OF THE SECOND SUGAR CHAIN PRESENTED WITH INSERTION CODE D.
ChainResidue
BASN140

site_idSU1
Number of Residues2
DetailsTHE FIRST SUGAR BINDING SITE OF ABRIN-A B-CHAIN BINDS MANNOSE, MAN4, OF THE SUGAR CHAIN WHICH SYMMETRICALLY RELATED TO THE FIRST SUGAR CHAIN IDENTIFIED WITH INSERTION CODE C.
ChainResidue
BASN31
BASN51

site_idSU2
Number of Residues1
DetailsTHE POTENTIAL SECOND SUGAR BINDING SITE OF ABRIN-A B-CHAIN. THIS IS NOT CONFIRMED BY CURRENT STRUCTURE.
ChainResidue
BASN260

Functional Information from PROSITE/UniProt
site_idPS00275
Number of Residues17
DetailsSHIGA_RICIN Shiga/ricin ribosomal inactivating toxins active site signature. IqMVaEAARFRyISnrV
ChainResidueDetails
AILE159-VAL175

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: ACT_SITE => ECO:0000250
ChainResidueDetails
AGLU164
BASN140

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Pyrrolidone carboxylic acid => ECO:0000269|Ref.2
ChainResidueDetails
AGLU1

Catalytic Information from CSA
site_idCSA1
Number of Residues2
Detailsa catalytic site defined by CSA, PubMed 7608980, 1433290
ChainResidueDetails
AGLU164
AARG167

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon