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9XS8

Crystal structure of a cupin protein (tm1459, H52A/H54A/H92A/C106E mutant) in ruthenium(p-cymene) bound form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL44XU
Synchrotron siteSPring-8
BeamlineBL44XU
Temperature [K]100
Detector technologyPIXEL
Collection date2023-11-20
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.899995
Spacegroup nameP 21 21 21
Unit cell lengths50.810, 57.630, 74.500
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 1.265
R-factor0.1487
Rwork0.147
R-free0.19810
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle0.026
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwareSHELXL
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.340
High resolution limit [Å]1.2651.265
Rmerge0.0440.581
Number of reflections11223218121
<I/σ(I)>13.792.03
Completeness [%]99.498.9
Redundancy3.43.2
CC(1/2)0.9980.723
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP629325% w/v Jeffamine ED-2001, 0.1M MES

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PDB entries from 2026-06-17

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