9X2G
Crystal Structure of Extradiol Dioxygenase (Edo4) from Rhizorhabdus wittichii RW1
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 HF |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2023-12-30 |
| Detector | RIGAKU HyPix-6000HE |
| Wavelength(s) | 1.54 |
| Spacegroup name | P 4 21 2 |
| Unit cell lengths | 132.998, 132.998, 181.650 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 25.470 - 2.050 |
| R-factor | 0.19481 |
| Rwork | 0.193 |
| R-free | 0.22386 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.521 |
| Data reduction software | CrysalisPro |
| Data scaling software | Aimless |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5.8.0403) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 25.470 | 2.123 |
| High resolution limit [Å] | 2.050 | 2.050 |
| Rmerge | 0.174 | 0.606 |
| Rmeas | 0.185 | 0.660 |
| Rpim | 0.060 | 0.258 |
| Number of reflections | 102234 | 10076 |
| <I/σ(I)> | 8.78 | 3.47 |
| Completeness [%] | 99.8 | 99.99 |
| Redundancy | 9.4 | 6 |
| CC(1/2) | 0.991 | 0.758 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293.15 | 10% w/v PEG 4000, 20% v/v glycerol, 0.03M halogens,0.1M bicine/Trizma base pH8.5 |
