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9WEG

Plasmodium vivax aspartyl-tRNA synthetase in complex with AMS, Mg ion, Iodides and Pentaethylene glycol

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2022-11-26
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97627
Spacegroup nameP 61 2 2
Unit cell lengths138.685, 138.685, 274.992
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution45.832 - 2.228
R-factor0.1911
Rwork0.190
R-free0.22080
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.004
RMSD bond angle0.704
Data reduction softwareautoPROC
Data scaling softwareautoPROC
Phasing softwarePHASER
Refinement softwarePHENIX ((1.15rc1_3423: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]120.1052.267
High resolution limit [Å]2.2282.228
Rmeas0.196
Number of reflections767983784
<I/σ(I)>16.20.5
Completeness [%]100.0100
Redundancy37.620.9
CC(1/2)0.9970.261
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293Morpheus B5: 0.1 M Buffer System 2 pH 7.5 (Sodium HEPES and MOPS), 30% Precipitant Mix 1 (40% v/v PEG 500* MME; 20 % w/v PEG 20000) and 0.09 M Halogens (0.3 M Sodium fluoride; 0.3 M Sodium bromide; 0.3 M Sodium iodide)

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PDB entries from 2026-09-02

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