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9WE9

Plasmodium vivax aspartyl-tRNA synthetase in complex with L-Asp, Lanthanide, MOPSO and Butanetriol

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2022-11-26
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.97627
Spacegroup nameP 61 2 2
Unit cell lengths138.737, 138.737, 272.751
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.628 - 2.402
R-factor0.1771
Rwork0.175
R-free0.21000
Structure solution methodSAD
RMSD bond length0.008
RMSD bond angle0.879
Data reduction softwareautoPROC
Data scaling softwareautoPROC
Phasing softwareAutoSol
Refinement softwarePHENIX ((1.15rc1_3423: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]128.5002.444
High resolution limit [Å]2.4022.402
Rmeas0.0900.883
Number of reflections608272986
<I/σ(I)>34.14.4
Completeness [%]99.597.3
Redundancy40.4
CC(1/2)0.9990.935
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5293Morpheous II E1: 0.1 M Buffer System 4 (MOPSO, Bis-Tris) pH 6.5, 36% Precipitant Mix 5 (30% w/v PEG 3000, 40% v/v 1, 2, 4- Butanetriol, 2% w/v NDSB 256), 2 mM Lanthanides [0.005M Yttrium(III) chloride hexahydrate, 0.005M Erbium(III) chloride hexahydrate, 0.005M Terbium(III) chloride hexahydrate, 0.005M Ytterbium(III) chloride hexahydrate]

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PDB entries from 2026-09-02

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