9VKF
Crystal structure of yeast arginine N-methyltransferase 1,HMT1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2025-04-03 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97 |
Spacegroup name | P 31 |
Unit cell lengths | 84.670, 84.670, 97.720 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.330 - 2.850 |
R-factor | 0.2349 |
Rwork | 0.235 |
R-free | 0.28370 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.690 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.330 | 2.920 |
High resolution limit [Å] | 2.850 | 2.850 |
Rmerge | 0.268 | 1.130 |
Number of reflections | 18335 | 1379 |
<I/σ(I)> | 15.2 | |
Completeness [%] | 100.0 | |
Redundancy | 10.1 | |
CC(1/2) | 0.993 | 0.811 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 289.15 | 0.15 M DL-Malic acid pH 7.0, 20% w/v Polyethylene glycol 3,350 |