9VDB
Crystal Structure of Dioxin Dioxygenase from Rhizorhabdus wittichii RW1
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 HF |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2023-11-09 |
| Detector | RIGAKU HyPix-6000HE |
| Wavelength(s) | 1.54 |
| Spacegroup name | P 2 3 |
| Unit cell lengths | 137.572, 137.572, 137.572 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 23.960 - 2.700 |
| R-factor | 0.23475 |
| Rwork | 0.232 |
| R-free | 0.29725 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.771 |
| Data reduction software | CrysalisPro |
| Data scaling software | Aimless |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5.8.0403) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 23.960 | 2.796 |
| High resolution limit [Å] | 2.700 | 2.700 |
| Rmerge | 0.108 | 0.477 |
| Rmeas | 0.117 | 0.526 |
| Rpim | 0.044 | 0.218 |
| Number of reflections | 23912 | 2346 |
| <I/σ(I)> | 20.23 | 2.94 |
| Completeness [%] | 98.6 | 99.49 |
| Redundancy | 6.5 | 5.6 |
| CC(1/2) | 0.997 | 0.968 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293.15 | 12% PEG8000, 0.1M Calcium acetate hydrate, and 0.15 M Sodium cacodylate pH 7.5 |
