9V4U
Crystal structure of Guanine-II riboswitch in complex with 7,8-dihydroneopterin
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL19U1 |
| Synchrotron site | SSRF |
| Beamline | BL19U1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2024-10-19 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 1.10221 |
| Spacegroup name | C 2 2 21 |
| Unit cell lengths | 37.933, 52.431, 218.524 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 36.420 - 2.540 |
| R-factor | 0.2282 |
| Rwork | 0.227 |
| R-free | 0.25840 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.006 |
| RMSD bond angle | 1.166 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER |
| Refinement software | PHENIX (PHENIX 1.18.2-3874) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 109.260 | 2.680 |
| High resolution limit [Å] | 2.540 | 2.540 |
| Rmerge | 0.161 | |
| Number of reflections | 7622 | 1093 |
| <I/σ(I)> | 4.5 | |
| Completeness [%] | 100.0 | 100 |
| Redundancy | 4.7 | |
| CC(1/2) | 0.997 | 0.538 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 289 | 0.08 M sodium chloride, 0.04 M sodium cacodylate trihydrate (pH 7.0), 30% v/v (+/-)-2-methyl-2,4-pentanediol, and 0.012 M spermine tetrahydrochloride |
