9UWZ
Crystal structure of the type III secretion chaperone VecA from Vibrio parahaemolyticus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL38B1 |
Synchrotron site | SPring-8 |
Beamline | BL38B1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-07 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.25380 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 73.754, 73.754, 109.906 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.810 - 2.200 |
R-factor | 0.2448 |
Rwork | 0.239 |
R-free | 0.29490 |
Structure solution method | SAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.070 |
Data reduction software | XDS |
Data scaling software | Aimless |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.120 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.120 | 1.612 |
Rmeas | 0.122 | 1.646 |
Rpim | 0.025 | 0.329 |
Number of reflections | 16059 | 1354 |
<I/σ(I)> | 20.9 | |
Completeness [%] | 100.0 | |
Redundancy | 23.8 | 24.6 |
CC(1/2) | 0.999 | 0.794 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.1M Tris-HCl (pH 8.8), 1.8M ammonium sulfate |