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9RT6

Structure of the toxin Schistosomine 79 from Schistosoma in P21

Replaces:  9FDM
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 1
Synchrotron siteSOLEIL
BeamlinePROXIMA 1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-06-13
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.91956
Spacegroup nameP 1 21 1
Unit cell lengths21.764, 38.411, 87.743
Unit cell angles90.00, 91.23, 90.00
Refinement procedure
Resolution19.660 - 1.897
R-factor0.2099
Rwork0.207
R-free0.24990
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle0.960
Data reduction softwareautoPROC
Data scaling softwareAimless (0.7.7)
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.4)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]19.6615.4222.000
High resolution limit [Å]1.8974.3071.897
Rmerge0.2600.1071.336
Rmeas0.2790.1140.108
Rpim0.1010.0400.566
Total number of observations77793
Number of reflections10239512512
<I/σ(I)>5.5512.6312.54
Completeness [%]91.210030.3
Completeness (spherical) [%]87.8
Completeness (ellipsoidal) [%]91.2
Redundancy7.67.847.18
CC(1/2)0.9850.9930.483
Anomalous completeness (spherical)87.4
Anomalous completeness90.9
Anomalous redundancy4.0
CC(ano)-0.220
|DANO|/σ(DANO)0.7
Diffraction limitsPrincipal axes of ellipsoid fitted to diffraction cut-off surface
1.800 Å0.981, 0.981, 0.981
1.977 Å0.000, 0.000, 0.000
1.937 Å-0.192, -0.192, -0.192
Criteria used in determination of diffraction limitslocal <I/sigmaI> ≥ 1.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP292AS, Tris-HCL, NaB

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PDB entries from 2025-07-23

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