9RQC

Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry G02

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	PETRA III, DESY BEAMLINE P11
Synchrotron site	PETRA III, DESY
Beamline	P11
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-10-07
Detector	DECTRIS EIGER2 X 16M
Wavelength(s)	1.0332
Spacegroup name	P 21 21 2
Unit cell lengths	67.728, 89.501, 44.913
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	54.010 - 1.150
R-factor	0.1446
Rwork	0.143
R-free	0.16940
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.006
RMSD bond angle	0.958
Data reduction software	XDS (BUILT 20220820)
Data scaling software	Aimless (0.7.4)
Phasing software	PHENIX (1.21.2-5419_9999)
Refinement software	PHENIX (1.21.2-5419_9999)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	54.010	1.174
High resolution limit [Å]	1.150	1.150
Rmerge	0.084	1.399
Rmeas	0.088	1.531
Rpim	0.025	0.602
Number of reflections	83393	1884
<I/σ(I)>	14	1.2
Completeness [%]	86.4	39.4
Redundancy	11.5	6
CC(1/2)	0.999	0.594

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	5.5	291	The protein was crystallized by mixing 0.45 uL of 12 mg/mL protein solution in 10 mM Hepes, pH 7.5, 50 mM NaCl, with 0.45 uL 16% (w/v) PEG3350, 0.25 M MgCl2, 0.2 M KBr, 0.1 M BisTris, pH 5.5 and 0.1 uL crystal microseeds in 26% (w/v) PEG3350, 0.25 M MgCl2, 0.2 M KBr, 0.1 M BisTris, pH 5.5. After at least 4 days of crystal growth, 40 nL of 100 mM compound, solubilized in 100% DMSO, was added using an acoustic droplet dispensing system.