9RDC
Crystal structure of Phytophthora infestans effector AVRcap1b in complex with the ENTH domain of Nicotiana benthamiana NbTOL9a protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-25 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 85.874, 136.912, 195.574 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 79.570 - 4.100 |
R-factor | 0.25005 |
Rwork | 0.248 |
R-free | 0.28596 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 1.529 |
Data reduction software | DIALS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0430) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 79.570 | 4.490 |
High resolution limit [Å] | 4.100 | 4.100 |
Rmerge | 0.106 | 2.126 |
Rmeas | 0.110 | 2.208 |
Rpim | 0.031 | 0.595 |
Total number of observations | 242580 | 59716 |
Number of reflections | 18772 | 4401 |
<I/σ(I)> | 9.6 | 1 |
Completeness [%] | 100.0 | |
Redundancy | 12.9 | 13.6 |
CC(1/2) | 1.000 | 0.518 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 294 | NULL |