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9R0Y

Crystal structure of NDM-1 with thiol compound 22b

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2024-06-28
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.9405
Spacegroup nameP 21 21 21
Unit cell lengths68.383, 73.350, 76.955
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.020 - 1.270
R-factor0.166
Rwork0.166
R-free0.19120
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.007
RMSD bond angle1.003
Data reduction softwareDIALS
Data scaling softwareDIALS
Phasing softwarePHENIX
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]53.1001.290
High resolution limit [Å]1.2701.270
Rpim0.0370.892
Number of reflections1019504949
<I/σ(I)>9.70.4
Completeness [%]99.5
Redundancy13.4
CC(1/2)0.9990.270
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2920.1M bis-tris pH 5.8, 32% PEG 3350, 0.15M (NH4)2SO4

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