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9QY1

Endo180 (uPARAP) carbohydrate-recognition domain 2 with bound methyl fucoside

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-1
Synchrotron siteSSRL
BeamlineBL12-1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-12-23
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97946
Spacegroup nameP 21 21 2
Unit cell lengths45.650, 66.560, 37.230
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.650 - 1.900
R-factor0.1865
Rwork0.184
R-free0.23860
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle0.805
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.0001.970
High resolution limit [Å]1.9001.900
Number of reflections9435922
<I/σ(I)>21.08
Completeness [%]100.0100
Redundancy24.722.4
CC(1/2)0.9900.992
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8289.5Drop: 5.2 mg/ml protein 5 mM CaCl2 10 mM Tris-Cl, pH 8.0 25mM NaCl 50mM alpha-Methyl-Fucoside Reservoir 26% polyethylene glycol 8K 0.1 M Tris-Cl, pH 8.0.

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PDB entries from 2025-06-18

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