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9QDG

Nitratidesulfovibrio vulgaris [FeFe] hydrogenase crystallized in the sodium propionate buffer at pH 5.0

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, DESY BEAMLINE P11
Synchrotron sitePETRA III, DESY
BeamlineP11
Temperature [K]100
Detector technologyPIXEL
Collection date2023-04-24
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)0.688805
Spacegroup nameP 21 21 21
Unit cell lengths49.724, 87.705, 89.684
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.840 - 1.020
Rwork0.194
R-free0.20710
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0425)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]44.84044.8401.040
High resolution limit [Å]1.0205.5901.020
Rmerge0.1900.0584.289
Rmeas0.2050.0634.702
Rpim0.0770.0231.896
Number of reflections19860313839648
<I/σ(I)>7.232.30.6
Completeness [%]99.7
Redundancy13.512.511.6
CC(1/2)0.9980.9990.288
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP529330% (w/v) PEG 4000, 1M LiCl, 0.1M sodium propionate pH 5.0

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PDB entries from 2026-04-01

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