9Q84
Crystal structure of Lotus japonicus CHIP13 extracellular domain in complex with chitooctaose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-09-19 |
Detector | DECTRIS EIGER2 X CdTe 16M |
Wavelength(s) | 0.97 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 73.882, 66.776, 53.203 |
Unit cell angles | 90.00, 109.35, 90.00 |
Refinement procedure
Resolution | 48.220 - 1.410 |
R-factor | 0.1482 |
Rwork | 0.146 |
R-free | 0.18140 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.131 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.21.2_5419) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.220 | 1.450 |
High resolution limit [Å] | 1.410 | 1.410 |
Rmerge | 0.064 | 0.998 |
Rmeas | 0.076 | 1.283 |
Rpim | 0.040 | 0.790 |
Number of reflections | 86273 | 2307 |
<I/σ(I)> | 7.96 | 0.79 |
Completeness [%] | 94.3 | |
Redundancy | 3.5 | |
CC(1/2) | 0.999 | 0.316 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 292.15 | 0.2 M NaCl, 0.1 M Bis-Tris pH 5.5, 25% (w/v) PEG-3350 |