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9Q3H

GspB Siglec domain bound to sialyl T antigen linked to serine-FMOC

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM07
Synchrotron siteESRF
BeamlineBM07
Temperature [K]100
Detector technologyPIXEL
Collection date2023-08-01
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97951
Spacegroup nameP 1
Unit cell lengths37.987, 38.111, 47.054
Unit cell angles70.20, 68.01, 62.08
Refinement procedure
Resolution23.100 - 1.890
R-factor0.1851
Rwork0.184
R-free0.21090
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle0.739
Data reduction softwareHKL-2000 (1.20_4459)
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]23.1001.930
High resolution limit [Å]1.8901.890
Rmerge0.184
Number of reflections143532360
<I/σ(I)>26.2
Completeness [%]86.063.2
Redundancy3.1
CC(1/2)0.9990.981
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2961 uL protein (22 mg/ml preincubated in 10 mM sTa-Ser-FMOC) and 2 uL reservoir solution over 600 uL reservoir solution ( 0.2 M MgCl2, 0.1 M Tris-HCl, pH 8.5, 50% PEG 4000). Crystals were cryoprotected in 25% (v/v) glycerol and flash-cooled in liquid nitrogen. protein was in 18 mM Tris-HCl, pH 7.5, and 200 mM NaCl.

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