9Q3H
GspB Siglec domain bound to sialyl T antigen linked to serine-FMOC
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM07 |
Synchrotron site | ESRF |
Beamline | BM07 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-08-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97951 |
Spacegroup name | P 1 |
Unit cell lengths | 37.987, 38.111, 47.054 |
Unit cell angles | 70.20, 68.01, 62.08 |
Refinement procedure
Resolution | 23.100 - 1.890 |
R-factor | 0.1851 |
Rwork | 0.184 |
R-free | 0.21090 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.739 |
Data reduction software | HKL-2000 (1.20_4459) |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 23.100 | 1.930 |
High resolution limit [Å] | 1.890 | 1.890 |
Rmerge | 0.184 | |
Number of reflections | 14353 | 2360 |
<I/σ(I)> | 26.2 | |
Completeness [%] | 86.0 | 63.2 |
Redundancy | 3.1 | |
CC(1/2) | 0.999 | 0.981 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 296 | 1 uL protein (22 mg/ml preincubated in 10 mM sTa-Ser-FMOC) and 2 uL reservoir solution over 600 uL reservoir solution ( 0.2 M MgCl2, 0.1 M Tris-HCl, pH 8.5, 50% PEG 4000). Crystals were cryoprotected in 25% (v/v) glycerol and flash-cooled in liquid nitrogen. protein was in 18 mM Tris-HCl, pH 7.5, and 200 mM NaCl. |