9O8J
Crystal structure of Phosphoglycerate mutase from Trichomonas vaginalis (sulfate bound)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 19-ID |
Synchrotron site | NSLS-II |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2024-12-14 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.9786 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 92.361, 95.803, 73.521 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.900 - 2.050 |
R-factor | 0.2071 |
Rwork | 0.205 |
R-free | 0.23930 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.494 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (dev_5660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.900 | 2.100 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.125 | 1.528 |
Rmeas | 0.130 | 1.588 |
Rpim | 0.036 | 0.429 |
Total number of observations | 549189 | 40923 |
Number of reflections | 41670 | 3028 |
<I/σ(I)> | 14.3 | 1.9 |
Completeness [%] | 100.0 | |
Redundancy | 13.2 | 13.5 |
CC(1/2) | 0.999 | 0.523 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | Crystal Screen HT F11: 1.60M A/S, 0.10M MES, pH 6.5, 10% 1,4-dioxane. TrvaA.01013.a.B1.PW39315 at 18.8 mg/mL. plate 19517 well F11 drop 1, Puck: PSL-0611, Cryo: 2.5M Li2SO4. |