Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9NXL

Crystal structure of steroid aldehyde dehydrogenase (Sad) from Caldimonas tepidiphilia

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08B1-1
Synchrotron siteCLSI
Beamline08B1-1
Temperature [K]100
Detector technologyPIXEL
Collection date2023-05-09
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.95372
Spacegroup nameP 21 21 21
Unit cell lengths82.930, 89.450, 153.820
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.700 - 1.800
R-factor0.1596
Rwork0.159
R-free0.19160
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.014
RMSD bond angle1.096
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.7001.850
High resolution limit [Å]1.8001.800
Number of reflections1431732111613
<I/σ(I)>11.681.01
Completeness [%]100.0
Redundancy13.5
CC(1/2)0.9980.406
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5277.1540% (v/v) 2-methyl-2,4-pentanediol (MPD), 3% (w/v) PEG 8000, 0.1 M sodium cacodylate (pH 6.5), and 10% (v/v) glycerol

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon