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9NPE

Crystal structure of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family in the space group P1 at 2.40 A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS BEAMLINE W01B-MX2
Synchrotron siteLNLS
BeamlineW01B-MX2
Temperature [K]100
Detector technologyPIXEL
Collection date2019-07-19
DetectorDECTRIS PILATUS 2M
Wavelength(s)0.97822
Spacegroup nameP 1
Unit cell lengths122.520, 124.140, 133.600
Unit cell angles89.30, 117.29, 103.48
Refinement procedure
Resolution20.000 - 2.400
R-factor0.224
Rwork0.222
R-free0.25530
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.546
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((1.21.2_5419: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]20.00020.0002.460
High resolution limit [Å]2.40010.7302.400
Rmerge0.1360.0420.981
Rmeas0.1520.0471.104
Number of reflections264442491239020
<I/σ(I)>8.56
Completeness [%]99.0
Redundancy5.1
CC(1/2)0.9950.9980.685
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2910.75 M ammonium phosphate dibasic, 0.1 M imidazole, pH8, 0.2 M sodium chloride

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PDB entries from 2026-01-21

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