Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9NPB

Crystal structure of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family in the space group R3 at 2.45 A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS SIRIUS BEAMLINE MANACA
Synchrotron siteLNLS SIRIUS
BeamlineMANACA
Temperature [K]100
Detector technologyPIXEL
Collection date2020-11-20
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.458640
Spacegroup nameH 3
Unit cell lengths180.437, 180.437, 69.827
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution45.110 - 2.450
R-factor0.1775
Rwork0.175
R-free0.21830
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle0.785
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.21.2_5419)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]45.11045.1102.600
High resolution limit [Å]2.4507.2602.450
Rmerge0.1610.0471.155
Rmeas0.2160.0601.587
Number of reflections311437163749
<I/σ(I)>3.14
Completeness [%]100.0
Redundancy10.35
CC(1/2)0.9770.9940.210
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29110% PEG8000, 0.1 M Imidazole, pH 8, 2 mM Tris(2-carboxyethyl)phosphine

250359

PDB entries from 2026-03-11

PDB statisticsPDBj update infoContact PDBjnumon