Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9NOD

[4,3,12-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,3,12) base pairs and 2 nt sticky ends

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2023-07-24
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.979338
Spacegroup nameH 3
Unit cell lengths89.487, 89.487, 139.818
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution37.340 - 7.230
R-factor0.2411
Rwork0.232
R-free0.26160
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle0.696
Data reduction softwareautoPROC
Data scaling softwareSTARANISO
Phasing softwarePHASER
Refinement softwarePHENIX (1.21.1_5286)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]67.78267.78210.032
High resolution limit [Å]7.23010.0847.230
Number of reflections446223223
<I/σ(I)>4.3
Completeness [%]80.7
Redundancy5.1
CC(1/2)0.9960.9960.716
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293100 mM MOPS, 1.25 M magnesium sulfate

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon