Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9ND7

[T:Ag+/Hg2+:T--(pH8-pH9.5; 75s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8 and soaked in pH 9.5 for 75s

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 19-ID
Synchrotron siteNSLS-II
Beamline19-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2024-10-05
DetectorDECTRIS EIGER2 X 9M
Wavelength(s)0.97856
Spacegroup nameH 3
Unit cell lengths104.431, 104.431, 92.838
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution19.740 - 5.700
R-factor0.1433
Rwork0.140
R-free0.22430
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.021
RMSD bond angle1.912
Data reduction softwareautoPROC
Data scaling softwareSTARANISO
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]19.74019.7366.495
High resolution limit [Å]5.6979.9765.697
Number of reflections1794181181
<I/σ(I)>6
Completeness [%]86.6
Redundancy5.5
CC(1/2)0.9910.9920.313
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8293100 mM MOPS, 1.25 M magnesium sulfate

248335

PDB entries from 2026-01-28

PDB statisticsPDBj update infoContact PDBjnumon