Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9ND4

[0,8,11-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (0,8,11) base pairs and 2 nt sticky ends

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2022-11-13
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.000000
Spacegroup nameH 3
Unit cell lengths98.097, 98.097, 116.395
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution39.900 - 5.300
R-factor0.1261
Rwork0.124
R-free0.14520
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle0.865
Data reduction softwareautoPROC
Data scaling softwareSTARANISO
Phasing softwarePHASER
Refinement softwarePHENIX (1.21.1_5286)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]68.62168.6215.711
High resolution limit [Å]5.30010.4475.301
Number of reflections1412202203
<I/σ(I)>13.3
Completeness [%]93.2
Redundancy10.5
CC(1/2)0.9990.9990.083
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293100 mM MOPS, 1.25 M magnesium sulfate

251174

PDB entries from 2026-03-25

PDB statisticsPDBj update infoContact PDBjnumon