Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9NB2

X-ray diffraction structure of papain soaked with E-64

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2023-05-08
DetectorRIGAKU RAXIS HTC
Wavelength(s)1.54
Spacegroup nameP 21 21 21
Unit cell lengths42.410, 48.910, 101.710
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution27.860 - 1.500
R-factor0.185
Rwork0.183
R-free0.21240
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle0.838
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]27.8601.600
High resolution limit [Å]1.5001.500
Rmerge0.0780.710
Number of reflections715706000
<I/σ(I)>18.223.72
Completeness [%]99.4100
Redundancy12.1
CC(1/2)0.9990.850
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP298889 mM NaCl and 59% methanol in reservoir. 66% methanol in sitting drop.

238895

PDB entries from 2025-07-16

PDB statisticsPDBj update infoContact PDBjnumon