9N5C
RNA polymerase II elongation complex with 8-oxoG at +1 site, CMPCPP-bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-11 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.984 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 162.638, 222.985, 192.256 |
Unit cell angles | 90.00, 98.55, 90.00 |
Refinement procedure
Resolution | 48.770 - 3.600 |
R-factor | 0.2533 |
Rwork | 0.252 |
R-free | 0.29730 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.699 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.19.2_4158: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.770 | 3.600 |
High resolution limit [Å] | 3.530 | 3.530 |
Rmerge | 0.514 | 5.842 |
Rmeas | 0.551 | 6.262 |
Rpim | 0.199 | 2.249 |
Total number of observations | 636204 | 34852 |
Number of reflections | 82990 | 4521 |
<I/σ(I)> | 5.2 | 0.5 |
Completeness [%] | 99.9 | |
Redundancy | 7.7 | 7.7 |
CC(1/2) | 0.985 | 0.234 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 390mM (NH4)2HPO4/NaH2PO4, pH 6.5, 5mM dioxane, 5mM DTT, 10-12% PEG6000 |