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9N57

Glutarate L-2-hydroxylase K270C mutant-5'-Mal-C2-AAATTT DNA conjugate in I422 space group

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 17-ID-2
Synchrotron siteNSLS-II
Beamline17-ID-2
Temperature [K]100
Detector technologyPIXEL
Collection date2024-04-13
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.979338
Spacegroup nameI 4 2 2
Unit cell lengths120.996, 120.996, 137.384
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution33.427 - 1.640
Rwork0.165
R-free0.20300
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.012
RMSD bond angle1.436
Data reduction softwareXDS (20230630)
Data scaling softwareAimless (0.7.15)
Phasing softwarePHASER (2.8.3)
Refinement softwareREFMAC (5.8.0430)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]33.43033.4301.670
High resolution limit [Å]1.6408.9801.640
Rmerge0.1810.0644.584
Rmeas0.1930.0694.902
Rpim0.0660.0231.729
Number of reflections623054423031
<I/σ(I)>1032.90.8
Completeness [%]100.098.1100
Redundancy16.313.615.6
CC(1/2)0.9960.9980.260
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2950.08 M Sodium chloride, 0.04 M Sodium cacodylate trihydrate pH 7.0, 30 % v/v (+/-)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride

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PDB entries from 2026-08-12

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