9N3R
Crystal structure of PRMT5:MEP50 in complex with MTA and TNG462
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.03317 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 98.210, 136.600, 178.010 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.700 - 2.470 |
R-factor | 0.2116 |
Rwork | 0.210 |
R-free | 0.24290 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.002 |
RMSD bond angle | 0.512 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | REFMAC |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.700 | 2.540 |
High resolution limit [Å] | 2.470 | 2.470 |
Rmerge | 0.156 | 0.778 |
Number of reflections | 52173 | 219 |
<I/σ(I)> | 13.3 | 3.5 |
Completeness [%] | 59.4 | 2.7 |
Redundancy | 13.7 | 13.9 |
CC(1/2) | 0.998 | 0.931 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6 | 291 | 10% PEG 4000, 0.1 M sodium citrate (pH 6.0), 0.2 M magnesium chloride, 1 mM methylthioadenosine |