9MT0
1.2 A Crystal Structure of Housefly cytochrome c at pH 11
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE F1 |
Synchrotron site | CHESS |
Beamline | F1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-03-07 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.9804 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 33.876, 58.634, 51.674 |
Unit cell angles | 90.00, 106.77, 90.00 |
Refinement procedure
Resolution | 37.810 - 1.200 |
R-factor | 0.1273 |
Rwork | 0.126 |
R-free | 0.16500 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.105 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (dev_3150) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.000 | 38.000 | 1.240 |
High resolution limit [Å] | 1.200 | 2.670 | 1.200 |
Rmerge | 0.088 | 0.081 | 0.459 |
Rmeas | 0.097 | 0.089 | 0.534 |
Rpim | 0.040 | 0.037 | 0.264 |
Number of reflections | 55990 | 5346 | 2478 |
<I/σ(I)> | 10.4 | 18.9 | 1.6 |
Completeness [%] | 91.8 | 94.75 | 45.23 |
Redundancy | 5.36 | 5.75 | 2.41 |
CC(1/2) | 0.994 | 0.988 | 0.779 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9.7 | 291 | Concentrated protein in 0.5 mM EDTA, 20 mM Tris-HCL pH 7.5 was mixed with an equal volume of precipitant containing 0.1 M Glycine pH 10.0 and 28% w/v Polyethylene Glycol Monomethyl Ether 2000 and allowed to vapor diffuse against a reservoir of the same precipitant. Before cryoprotection and freezing, the crystal was transferred to a well containing 0.1 M CAPS pH 11.0 and 28% w/v Polyethylene Glycol Monomethyl Ether 2000. The crystal fractured, and a fragment was ued for collection. |