9MGP
Crystal structure of PRMT5:MEP50 in complex with MTA and compound 46a
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-31 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 99.140, 137.690, 178.430 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.440 - 2.670 |
R-factor | 0.2226 |
Rwork | 0.220 |
R-free | 0.27080 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.675 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.100 | 2.800 |
High resolution limit [Å] | 2.670 | 2.670 |
Rmerge | 0.085 | 0.707 |
Rmeas | 0.093 | 0.770 |
Rpim | 0.036 | 0.302 |
Total number of observations | 29550 | |
Number of reflections | 35013 | 4592 |
<I/σ(I)> | 14.9 | 2.2 |
Completeness [%] | 99.9 | |
Redundancy | 6.7 | 6.4 |
CC(1/2) | 0.999 | 0.934 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 10% PEG 4000, 0.1 M sodium citrate (pH 6.0), 0.2 M magnesium chloride |