9MGN
Crystal structure of PRMT5:MEP50 in complex with MTA and compound 41
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-09 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.07812 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 101.650, 137.840, 179.090 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.800 - 2.820 |
R-factor | 0.23134 |
Rwork | 0.229 |
R-free | 0.28094 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.002 |
RMSD bond angle | 1.292 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.800 | 2.890 |
High resolution limit [Å] | 2.820 | 2.820 |
Rmerge | 0.122 | 1.154 |
Rmeas | 0.126 | 1.197 |
Rpim | 0.034 | 0.317 |
Total number of observations | 30718 | |
Number of reflections | 30319 | 2184 |
<I/σ(I)> | 14.2 | 2.2 |
Completeness [%] | 98.9 | |
Redundancy | 13.5 | 14.1 |
CC(1/2) | 0.998 | 0.924 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 291 | 10% PEG 4000, 0.1 M sodium citrate (pH 6.0), 0.2 M magnesium chloride |