9M7F
Crystal structure of AsDMS D333N mutant in complex with farnesyl pyrophosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-10 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.040000 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 96.546, 96.546, 401.409 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.303 - 2.600 |
R-factor | 0.195099463997 |
Rwork | 0.193 |
R-free | 0.23567 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold |
RMSD bond length | 0.008 |
RMSD bond angle | 0.947 |
Data reduction software | XDS (VERSION Jan 10, 2022 BUILT=20220120) |
Data scaling software | XDS (VERSION Jan 10, 2022 BUILT=20220120) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.303 | 2.693 |
High resolution limit [Å] | 2.600 | 2.600 |
Number of reflections | 59769 | 5855 |
<I/σ(I)> | 13.84 | 1.85 |
Completeness [%] | 100.0 | 100 |
Redundancy | 13.5 | 14.2 |
CC(1/2) | 0.998 | 0.720 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 1.72 M ammonium sulfate, 0.095 M MES-NaOH pH6.5, 0.005 M MES-NaOH pH7.0 |