9LVH
Crystal structure of the mouse RIP3 kinase domain in complexed with Tricetin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-04-13 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.97915 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 152.424, 51.247, 104.907 |
Unit cell angles | 90.00, 131.85, 90.00 |
Refinement procedure
Resolution | 28.880 - 2.380 |
R-factor | 0.2507 |
Rwork | 0.250 |
R-free | 0.27050 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.932 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.17.1_3660: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.430 | 2.510 |
High resolution limit [Å] | 2.380 | 2.380 |
Rmerge | 0.096 | 0.941 |
Rmeas | 0.105 | 1.025 |
Rpim | 0.042 | 0.402 |
Total number of observations | 155484 | 23225 |
Number of reflections | 24599 | 3580 |
<I/σ(I)> | 11.6 | 2.4 |
Completeness [%] | 99.9 | |
Redundancy | 6.3 | 6.5 |
CC(1/2) | 0.998 | 0.865 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 10-20% PEG3350, 50 mM magnesium formate, pH 5.0-7.0 |