9JXT
An aldehyde-containing intermediate of SufS in complex with (2R,3R)-3-ethoxycarbonylaziridine-2-carboxylic acid
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-13 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 92.700, 92.700, 128.320 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.350 - 2.200 |
R-factor | 0.17602 |
Rwork | 0.174 |
R-free | 0.21223 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6kfy |
RMSD bond length | 0.009 |
RMSD bond angle | 1.907 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.300 |
High resolution limit [Å] | 2.200 | 10.000 | 2.200 |
Rmerge | 0.065 | 0.017 | 0.832 |
Rmeas | 0.068 | 0.018 | 0.877 |
Number of reflections | 32955 | 408 | 4037 |
<I/σ(I)> | 23.67 | ||
Completeness [%] | 100.0 | ||
Redundancy | 10.1 | ||
CC(1/2) | 1.000 | 1.000 | 0.828 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1 M Tris-HCl, 50 mM Lithium sulfate, 50% (v/v) PEG200 |