9JWJ
Structure of Human HDAC2 in complex with inhibitor N-(2-amino-5-(furan-2-yl)phenyl)-4-(1-((phenylsulfonyl)methyl)-1H-1,2,3-triazol-4-yl)benzamid
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-07-07 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 92.279, 98.562, 139.597 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.780 |
R-factor | 0.16207 |
Rwork | 0.160 |
R-free | 0.20248 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ly1 |
RMSD bond length | 0.020 |
RMSD bond angle | 1.951 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0218) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.880 |
High resolution limit [Å] | 1.780 | 1.780 |
Rmerge | 0.078 | 0.611 |
Rmeas | 0.088 | 0.679 |
Rpim | 0.038 | 0.287 |
Total number of observations | 77155 | |
Number of reflections | 110377 | 16112 |
<I/σ(I)> | 10.8 | 3.5 |
Completeness [%] | 91.2 | |
Redundancy | 4.9 | 4.8 |
CC(1/2) | 0.997 | 0.805 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 291 | 0.1 M CHES pH 9.5, 35-38% (v/v) PEG 600 |