9JN3
Crystal structure of AvpGT in complex with Ara-A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17UM |
Synchrotron site | SSRF |
Beamline | BL17UM |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-12-28 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.987 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 43.302, 95.114, 70.988 |
Unit cell angles | 90.00, 101.12, 90.00 |
Refinement procedure
Resolution | 24.810 - 2.400 |
R-factor | 0.1845 |
Rwork | 0.181 |
R-free | 0.24840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 9jma |
RMSD bond length | 0.011 |
RMSD bond angle | 1.251 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19.2_4158: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.810 | 2.486 |
High resolution limit [Å] | 2.400 | 2.400 |
Number of reflections | 22081 | 2187 |
<I/σ(I)> | 6.64 | 2.34 |
Completeness [%] | 99.6 | |
Redundancy | 6.5 | |
CC(1/2) | 0.983 | 0.816 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 20% (w/v) PEG 6000, 0.1 M Hepes, 0.2 M Calcium chloride dihydrate |