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9JL8

De novo designed GPX4 2OBI-1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL10U2
Synchrotron siteSSRF
BeamlineBL10U2
Temperature [K]100
Detector technologyPIXEL
Collection date2024-06-20
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97918
Spacegroup nameP 1 21 1
Unit cell lengths32.438, 71.633, 33.875
Unit cell angles90.00, 109.16, 90.00
Refinement procedure
Resolution23.860 - 1.320
R-factor0.1926
Rwork0.191
R-free0.21740
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.013
RMSD bond angle1.245
Data reduction softwareautoPROC (1.0.5)
Data scaling softwareAimless (0.7.7)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]71.6301.350
High resolution limit [Å]1.3201.320
Rmerge0.0520.162
Rmeas0.0570.184
Rpim0.0220.085
Number of reflections334082426
<I/σ(I)>21.67.4
Completeness [%]97.4
Redundancy6.4
CC(1/2)0.9970.975
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2910.2M Sodium acetate, 0.1m Bis-Tris 5.5, 25% PEG3350

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PDB entries from 2026-04-08

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