9JKD
Crystal structure of Aspergillus fumigatus polymycovirus 1 ploymerase elongation complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-01-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 118.270, 118.270, 136.942 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.320 - 2.340 |
R-factor | 0.1754 |
Rwork | 0.173 |
R-free | 0.21670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Cyro-EM structure of AfuPmV-1 N85 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.420 |
High resolution limit [Å] | 2.340 | 5.040 | 2.340 |
Rmerge | 0.065 | 0.028 | 0.593 |
Rmeas | 0.066 | 0.029 | 0.605 |
Rpim | 0.013 | 0.006 | 0.123 |
Total number of observations | 1073844 | ||
Number of reflections | 41675 | 4454 | 4114 |
<I/σ(I)> | 11.7 | ||
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 25.8 | 24 | 23.8 |
CC(1/2) | 1.000 | 0.964 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 289 | potassium acetate, pentaerythritol propoxylate (5/4 PO/OH) |