9JGB
Crystal structure of Nep1 from Pyrococcus horikoshii OT3
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 HF |
| Temperature [K] | 100 |
| Detector technology | IMAGE PLATE |
| Collection date | 2023-04-18 |
| Detector | RIGAKU RAXIS IV++ |
| Wavelength(s) | 1.5418 |
| Spacegroup name | H 3 2 |
| Unit cell lengths | 113.810, 113.810, 102.400 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 71.010 - 3.100 |
| R-factor | 0.1683 |
| Rwork | 0.164 |
| R-free | 0.24511 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.005 |
| RMSD bond angle | 1.183 |
| Data reduction software | MOSFLM (7.4.0) |
| Data scaling software | Aimless (0.7.9) |
| Phasing software | PHASER (2.8.3) |
| Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 71.010 | 3.310 |
| High resolution limit [Å] | 3.100 | 3.100 |
| Rmerge | 0.134 | 0.427 |
| Rmeas | 0.139 | 0.445 |
| Rpim | 0.038 | 0.122 |
| Total number of observations | 62217 | 11144 |
| Number of reflections | 4773 | 847 |
| <I/σ(I)> | 16.4 | 5.4 |
| Completeness [%] | 100.0 | |
| Redundancy | 13 | 13.2 |
| CC(1/2) | 0.996 | 0.955 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | MICROBATCH | 8 | 293 | 0.2M ammonium sulfate, 0.1M Tris-Base pH 8.0, 20% (v/v) PEG smear broad |






