9J20
Structure of WDR5 in complex with KIF2A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2024-07-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 64.874, 47.150, 104.309 |
Unit cell angles | 90.00, 107.47, 90.00 |
Refinement procedure
Resolution | 34.100 - 1.850 |
R-factor | 0.1727 |
Rwork | 0.171 |
R-free | 0.20630 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.268 |
Data reduction software | autoPROC |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19.2_4158: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 1.950 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.115 | 0.587 |
Rmeas | 0.125 | 0.637 |
Rpim | 0.048 | 0.244 |
Total number of observations | 355002 | 51186 |
Number of reflections | 51828 | 7523 |
<I/σ(I)> | 10.2 | 3.4 |
Completeness [%] | 100.0 | |
Redundancy | 6.8 | 6.8 |
CC(1/2) | 0.997 | 0.895 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.1 M HEPES (pH 7.5) and 18% PEG 600 |