9IN9
Structure of the viral channelrhodopsin OLPVR1 at low pH obtained by soaking
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-10-06 |
Detector | DECTRIS EIGER2 X CdTe 16M |
Wavelength(s) | 0.8856 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 46.235, 115.755, 53.214 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.420 - 1.410 |
R-factor | 0.1892 |
Rwork | 0.188 |
R-free | 0.21800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7aky |
RMSD bond length | 0.008 |
RMSD bond angle | 0.931 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.420 | 1.550 |
High resolution limit [Å] | 1.410 | 1.410 |
Rpim | 0.025 | 0.952 |
Number of reflections | 36461 | 1824 |
<I/σ(I)> | 13.1 | 0.8 |
Completeness [%] | 92.8 | 75.9 |
Redundancy | 4.9 | 6.6 |
CC(1/2) | 0.999 | 0.316 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 8 | 293 | 100 mM Tris, 900 mM NaCl, and 24% (w/v) PEG 6000; Soaked: 100 mM sodium citrate pH 2.5, 900 mM NaCl, and 24% (w/v) PEG 6000 |