Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

9ICA

DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND MNCL2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]298
Detector technologyAREA DETECTOR
Collection date1995-03-13
DetectorSDMS
Spacegroup nameP 21 21 2
Unit cell lengths178.479, 57.751, 48.511
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 3.000
R-factor0.166

*

Structure solution methodDIFFERENCE FOURIER
Starting model (for MR)8icb
RMSD bond length0.017
RMSD bond angle18.800

*

Data reduction softwareSDMS
Data scaling softwareSDMS
Phasing softwareTNT (V. 5-D)
Refinement softwareTNT (5-D)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0003.100
High resolution limit [Å]3.0003.000
Rmerge0.057

*

0.160

*

Number of reflections9260
Completeness [%]87.079
Redundancy2.11.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, sitting drop

*

6.5298

*

THIS ENTRY DESCRIBES THE STRUCTURE THAT RESULTED WHEN A COCRYSTAL OF HUMAN DNA POLYMERASE BETA COMPLEXED WITH 7 BASE PAIRS OF DNA (SEE ENTRY 9ICJ AND REFERENCE 1) HAD BEEN SOAKED IN THE FOLLOWING SOLUTION FOR 24 HOURS: PEG 3350, 16% MES, 100 MILLIMOLAR, PH 6.5 NACL, 150 MILLIMOLAR DATP(ALPHA)S, 1 MILLIMOLAR MNCL2, 5 MILLIMOLAR SEE REFERENCE 2 FOR DETAILS CONCERNING EXPERIMENTAL PROCEDURES, RESULTS, AND DISCUSSION FOR THIS STRUCTURE.
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirPEG335015-17 (%)
21reservoircitrate0.1 (M)
31reservoir50 (mM)

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon