Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9I3D

Isopenicillin N synthase co-crystallised with Fe and ACdV after 10s O2 exposure

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeFREE ELECTRON LASER
Source detailsPAL-XFEL BEAMLINE NCI
Synchrotron sitePAL-XFEL
BeamlineNCI
Temperature [K]293
Detector technologyCCD
Collection date2019-10-15
DetectorRAYONIX MX225-HS
Wavelength(s)1.318066
Spacegroup nameP 21 21 21
Unit cell lengths41.492, 74.806, 101.383
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution27.780 - 1.680
R-factor0.2133
Rwork0.211
R-free0.25860
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle0.741
Data reduction softwarecctbx.xfel
Data scaling softwarecctbx.xfel.merge
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]27.7801.710
High resolution limit [Å]1.6801.680
Number of reflections367721807
<I/σ(I)>3.9210.61
Completeness [%]100.099.72
Redundancy93.7511.04
CC(1/2)0.9840.096
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1BATCH MODE8.52931.7M Li2SO4, 0.1 M TRIS pH 8.5

258009

PDB entries from 2026-08-12

PDB statisticsPDBj update infoContact PDBjnumon