9I1H
Crystal structure of human CD73 (ecto-5'-nucleotidase) in complex with the AMPCP analog PSB-12730 in the closed state (crystal form IV)
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 95.168, 233.606, 54.327 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 88.130 - 2.350 |
R-factor | 0.2691 |
Rwork | 0.267 |
R-free | 0.31560 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.003 |
RMSD bond angle | 0.601 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | autoBUSTER |
Refinement software | PHENIX ((1.21.2_5419: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 88.130 | 2.430 |
High resolution limit [Å] | 2.350 | 2.350 |
Rmerge | 0.197 | 1.719 |
Rmeas | 0.216 | 2.059 |
Rpim | 0.088 | 1.098 |
Total number of observations | 271774 | 5838 |
Number of reflections | 48282 | 2161 |
<I/σ(I)> | 4.3 | 0.6 |
Completeness [%] | 94.2 | |
Redundancy | 5.6 | 2.7 |
CC(1/2) | 0.996 | 0.425 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 295 | 5 % PEG 200, 10 mM PSB-17230, 20 % PEG 3350, 10 microM ZnCl2 and 0.1 M Tris pH 7.0 |