9HT3
Crystal structure of PA0884, the SBP component of a Pseudomonas aeruginosa PAO1 Tripartite ATP-independent Periplasmic (TRAP) transporter, complexed with itaconate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-02-10 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 34.206, 117.490, 166.063 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.070 - 1.800 |
R-factor | 0.18783 |
Rwork | 0.185 |
R-free | 0.23205 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.015 |
RMSD bond angle | 2.575 |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.070 | 50.070 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.308 | 0.055 | 3.617 |
Rmeas | 0.333 | 0.059 | 3.908 |
Rpim | 0.126 | 0.022 | 1.469 |
Number of reflections | 63463 | 6884 | 49762 |
<I/σ(I)> | 7.1 | ||
Completeness [%] | 100.0 | ||
Redundancy | 13.1 | 11.1 | 13.6 |
CC(1/2) | 0.995 | 0.998 | 0.354 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | JCSG-plus HT-96 D12: 0.04 M Potassium phosphate monobasic, 16 % w/v PEG 8000, 20 % v/v Glycerol |